PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0677s0020.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 171aa    MW: 18533.1 Da    PI: 10.2264
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0677s0020.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.33e-211665255
                  AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         +y+GVr ++ +gr++AeIrd ++    ++r++lg+f+t+eeAa a++ a+++l+g
  Kalax.0677s0020.1.p 16 HYRGVRKRP-WGRYAAEIRDpWK----KTRVWLGTFDTPEEAALAYDTAARSLRG 65
                         69*******.**********883....5*************************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.1171673IPR001471AP2/ERF domain
PfamPF008478.6E-141665IPR001471AP2/ERF domain
SuperFamilySSF541714.51E-231674IPR016177DNA-binding domain
SMARTSM003806.3E-401679IPR001471AP2/ERF domain
CDDcd000189.30E-291672No hitNo description
Gene3DG3DSA:3.30.730.101.2E-321673IPR001471AP2/ERF domain
PRINTSPR003674.9E-111728IPR001471AP2/ERF domain
PRINTSPR003674.9E-113955IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MSAAAGGGGG GGGEGHYRGV RKRPWGRYAA EIRDPWKKTR VWLGTFDTPE EAALAYDTAA  60
RSLRGPKAKT NFPPQPPPSS PPPPPLSLDL NPPRWAALVH HRPQPLSFSE FLRTDSLAPR  120
CCPDPLPSNS ASFPSGFPPM QRLQALELFR DAKPPRGLAI DLNEPPPLWM *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-221673563ATERF1
3gcc_A9e-221673563ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00645PBMTransfer from LOC_Os05g41760Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006449387.13e-49hypothetical protein CICLE_v10016982mg
RefseqXP_006467752.13e-49PREDICTED: ethylene-responsive transcription factor 12
SwissprotQ94ID61e-40ERF81_ARATH; Ethylene-responsive transcription factor 12
TrEMBLA0A067GG803e-49A0A067GG80_CITSI; Uncharacterized protein
TrEMBLB8YM263e-49B8YM26_CITUN; Putative ethylene responsive element binding protein 1
TrEMBLV4U9J03e-49V4U9J0_9R
STRINGGLYMA13G31010.17e-46(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.17e-37ERF domain protein 12